Stem-loop lja-MIR11152

Accession

MI0035924

Description

Lotus japonicus lja-MIR11152 precursor miRNA

Sequence

ucaccugacagugucauGUUGAAAUUUAGUGUCUAUCUCUCucuucauacuuauuaaauauuuauaaagagagagguagaaauaaaguuucacaugacaauaucauuuga
(((..(((...((((((((.(((((((.((.((((((((((((((.(((..(((...)))..))).)))))))))))))).)).)))))))))))))))...)))..)))

Structure

   cc   cag        U       A  G              c   cu   u 
uca  uga   ugucauGU GAAAUUU GU UCUAUCUCUCucuu aua  uau  
|||  |||   |||||||| ||||||| || |||||||||||||| |||  ||| a
agu  acu   acaguaca cuuugaa ua agauggagagagaa uau  aua  
   uu   aua        -       a  a              a   uu   a 

Annotation confidence Not enough data

Genome context

Chr4: 1013398-1013507 [+]

Mature lja-miR11152-5p

• Accession: MIMAT0043946
• Description: Lotus japonicus lja-miR11152-5p mature miRNA
• Sequence: 18 - GUUGAAAUUUAGUGUCUAUCUCUC - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256