Stem-loop lja-MIR11153

Accession

MI0035925

Description

Lotus japonicus lja-MIR11153 precursor miRNA

Sequence

ugguaacuuuUCCUAUCGGUAAGUUUCUGACAGCcuugucuaucuguaauuuaccuaugacuuuaaguguugucgguaacuuucaccgauaaagaguuuaccg
.((((((((((..((((((((((((.((((((((((((((.((..(((...)))..)))))...))).)))))))).)))))..)))))))))))).))))).

Structure

u     -     CC       --     U        -   ---   u  cu   a 
 gguaa cuuuU  UAUCGGU  AAGUU CUGACAGC cuu   guc au  gua  
 ||||| |||||  |||||||  ||||| |||||||| |||   ||| ||  ||| u
 ccauu gagaa  auagcca  uucaa ggcuguug gaa   cag ua  cau  
g     u     --       cu     u        u   uuu   -  uc   u 

Annotation confidence Not enough data

Genome context

Chr0: 30809302-30809404 [-]

Mature lja-miR11153-5p

• Accession: MIMAT0043947
• Description: Lotus japonicus lja-miR11153-5p mature miRNA
• Sequence: 11 - UCCUAUCGGUAAGUUUCUGACAGC - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256