Stem-loop lja-MIR11154

Accession

MI0035926

Description

Lotus japonicus lja-MIR11154 precursor miRNA

Sequence

ggauacugugugcaugucuUGAUACACGGUAGAAAAUCACAGCaaaacaaauaguaauuuacuuugauugugauuuuuaccguguauccaaacauucaucaaauuaguuuuugucc
((((((((((((.((((...(((((((((((((((.((((((((((..((((....))))..)))).)))))))))))))))))))))...)))).)).))...))))....))))

Structure

    ----    ---  -  c    cuU               A      -    ac    a 
ggau    acug   ug ug augu   GAUACACGGUAGAAA UCACAG Caaa  aaau g
||||    ||||   || || ||||   ||||||||||||||| |||||| ||||  ||||  
ccug    ugau   ac ac uaca   cuaugugccauuuuu aguguu guuu  uuua u
    uuuu    uaa  u  u    aac               -      a    ca    a 

Annotation confidence Not enough data

Genome context

Chr4: 1243272-1243387 [+]

Mature lja-miR11154-5p

• Accession: MIMAT0043948
• Description: Lotus japonicus lja-miR11154-5p mature miRNA
• Sequence: 20 - UGAUACACGGUAGAAAAUCACAGC - 43
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256