Stem-loop lja-MIR11155a

Accession

MI0035927

Description

Lotus japonicus lja-MIR11155a precursor miRNA

Sequence

guucauggucAAAUUAGUCUCUGAGUUUGUAAGCgaguuuaauuuuagucucucugaggaaaaaaugacguuuaguggcggucauuuuuacaauuacuccgcgaucuaaaaccccgcacuaaacauuauuuuuccucauauggaauaaagucgaacucgcuuacgaacucggggaauaauuugacuauuaac
(((.((((((((((((.(((((((((((((((((((((((.((((((.(((...((((((((((.(((.((((((((.(((....(((((................)))))..))))))))))).)))))))))))))...))).)))))).))))))))))))))))))))))).)))))))))))).)))

Structure

   c            G                       a      g   cuc          a   c        g   ucau     caauuac 
guu auggucAAAUUA UCUCUGAGUUUGUAAGCgaguuu auuuua ucu   ugaggaaaaa uga guuuagug cgg    uuuua       u
||| |||||||||||| ||||||||||||||||||||||| |||||| |||   |||||||||| ||| |||||||| |||    |||||        
caa uaucaguuuaau aggggcucaagcauucgcucaag ugaaau agg   acuccuuuuu auu caaaucac gcc    aaaau       c
   u            a                       c      a   uau          -   a        -   --cc     cuagcgc 

Annotation confidence Not enough data

Genome context

Chr4: 7480073-7480264 [+]

Mature lja-miR11155a-5p

• Accession: MIMAT0043949
• Description: Lotus japonicus lja-miR11155a-5p mature miRNA
• Sequence: 11 - AAAUUAGUCUCUGAGUUUGUAAGC - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256