Stem-loop lja-MIR1511

Accession

MI0035928

Description

Lotus japonicus lja-MIR1511 precursor miRNA

Literature search

1 open access papers mention lja-MIR1511
(3 sentences)

Sequence

416910 reads, 92077.0 reads per million, 9 experiments

uucAUGGUAUCAUAACCUGCUUCAcuuaguggucuuguguucaaauacugcucaagcacauggugAACCAGGCUCUGAUACCAUGAagc
((((((((((((...((((.((((((..(((..((((.((.........)).))))..))))))))).))))...))))))))))))..

Structure

--            UAA    C      ua   gu    u  uca 
  uucAUGGUAUCA   CCUG UUCAcu  gug  cuug gu   a
  ||||||||||||   |||| ||||||  |||  |||| ||   a
  aAGUACCAUAGU   GGAC AAgugg  uac  gaac cg   u
cg            CUC    C      --   ac    u  uca 

Annotation confidence High

Genome context

Chr2: 22969019-22969107 [+]

Mature lja-miR1511-5p

• Accession: MIMAT0054714
• Description: Lotus japonicus lja-miR1511-5p mature miRNA
• Sequence: 4 - AUGGUAUCAUAACCUGCUUCA - 24
• Evidence: experimental ; unknown

Mature lja-miR1511-3p

• Accession: MIMAT0043950
• Description: Lotus japonicus lja-miR1511-3p mature miRNA
• Sequence: 66 - AACCAGGCUCUGAUACCAUGA - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256