Stem-loop lja-MIR11156

Accession

MI0035929

Description

Lotus japonicus lja-MIR11156 precursor miRNA

Sequence

928 reads, 99.0 reads per million, 9 experiments

aagugagagcaauguuuauugugaaagAUGGGAUGAUUGAAUUUUGACAAUuugaucuaacaugaaugaucaagauuaaaacauaaagucacaugaucauuaauuagcauuuaaucuccACCACUCAUGUUAGAUCAAAuggucaagauuccaucaucucauuucucaccauaaacauuucuuucgcuu
(((((((((.(((((((((.((((.((((((((((((.((((((((((.(((((((((((((((((((((((.((((.........))))...)))))))........................)))))))))))))))).)))))))))).)))))))))))).)))).))))))))).)))))))))

Structure

         c         u    a            U          A                ------------------------       --a    aaa 
aagugagag aauguuuau guga agAUGGGAUGAU GAAUUUUGAC AUuugaucuaacauga                        augauca   gauu   a
||||||||| ||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||                        |||||||   ||||   c
uucgcuuuc uuacaaaua cacu uuuacucuacua cuuagaacug uAAACUAGAUUGUACU                        uacuagu   cuga   a
         u         c    c            c          g                CACCAccucuaauuuacgauuaau       aca    aau 

Annotation confidence Not enough data

Genome context

Chr0: 9016074-9016262 [-]

Mature lja-miR11156-5p

• Accession: MIMAT0043951
• Description: Lotus japonicus lja-miR11156-5p mature miRNA
• Sequence: 28 - AUGGGAUGAUUGAAUUUUGACAAU - 51
• Evidence: experimental ; Illumina [1]

Mature lja-miR11156-3p

• Accession: MIMAT0054715
• Description: Lotus japonicus lja-miR11156-3p mature miRNA
• Sequence: 120 - ACCACUCAUGUUAGAUCAAA - 139
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256