Stem-loop lja-MIR11155b

Accession

MI0035930

Description

Lotus japonicus lja-MIR11155b precursor miRNA

Sequence

1783 reads, 243.0 reads per million, 9 experiments

auuagucucuuaauuauaagcgAGUUUGAUUUUAGUCCCUCUGAgaaaauaugauuuuuaguggcggucauguuuacaauuacuggcgguuuugaccaccacuaaaacgucauuuuuccuuagauggacuaaaAUUAAACUCGCUUACAAACcuagggacuaau
((((((((((......((((((((((((((((((((((.((((((.(((.((((((((((((((.(((((......((.....)).......))))).))))))))).))))).))).)))))).)))))))))))))))))))))).......))))))))))

Structure

          -uaauua                      C      a   u     -         c     -uguuua  a 
auuagucucu       uaagcgAGUUUGAUUUUAGUCC UCUGAg aaa augau uuuuagugg gguca       ca u
||||||||||       |||||||||||||||||||||| |||||| ||| ||||| ||||||||| |||||       || u
uaaucaggga       AUUCGCUCAAAUUAaaaucagg agauuc uuu uacug aaaaucacc ccagu       gu a
          ucCAAAC                      u      c   u     c         a     uuuggcg  c 

Annotation confidence Low

Genome context

Chr4: 8391047-8391210 [+]

Mature lja-miR11155b-5p

• Accession: MIMAT0043952
• Description: Lotus japonicus lja-miR11155b-5p mature miRNA
• Sequence: 23 - AGUUUGAUUUUAGUCCCUCUGA - 44
• Evidence: experimental ; Illumina [1]

Mature lja-miR11155b-3p

• Accession: MIMAT0054716
• Description: Lotus japonicus lja-miR11155b-3p mature miRNA
• Sequence: 134 - AUUAAACUCGCUUACAAAC - 152
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256