Stem-loop lja-MIR11157

Accession

MI0035932

Description

Lotus japonicus lja-MIR11157 precursor miRNA

Sequence

324 reads, 31.0 reads per million, 8 experiments

gacuacaagcaacuauaguuuuaucuuUUUGUUAUCUAGUAUUUUUGAauauuaaaaaaacuaggugacgagaagauaauauucaaaaauacuagauaacaacgagaUAAAAUUAGGGUUGUUUGUAAuc
...(((((((((((.((((((((((((.((((((((((((((((((((((((((......((.(....).))....)))))))))))))))))))))))))).)))))))))))).)))))))))))...

Structure

gac           a            U                          aaaaaa  a g 
   uacaagcaacu uaguuuuaucuu UUGUUAUCUAGUAUUUUUGAauauua      cu g u
   ||||||||||| |||||||||||| ||||||||||||||||||||||||||      || |  
   AUGUUUGUUGG AUUAAAAUagag aacaauagaucauaaaaacuuauaau      ga c g
cuA           G            c                          --agaa  g a 

Annotation confidence Low

Genome context

Chr4: 1000546-1000675 [+]

Mature lja-miR11157-5p

• Accession: MIMAT0054717
• Description: Lotus japonicus lja-miR11157-5p mature miRNA
• Sequence: 28 - UUUGUUAUCUAGUAUUUUUGA - 48
• Evidence: experimental ; unknown

Mature lja-miR11157-3p

• Accession: MIMAT0043954
• Description: Lotus japonicus lja-miR11157-3p mature miRNA
• Sequence: 108 - UAAAAUUAGGGUUGUUUGUAA - 128
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256