Stem-loop lja-MIR11159

Accession

MI0035934

Description

Lotus japonicus lja-MIR11159 precursor miRNA

Sequence

1374 reads, 201.0 reads per million, 9 experiments

uuugauaacaguuuccaaaacaguuuucaguUUUUAAAAACUGAAAACUUGUUUGGUAAGACCuguuuucaaa
.((((.(((((((((((((..((((((((((((....))))))))))))..)))))..))).))))).)))).

Structure

u    u     -   --     ac            U 
 uuga aacag uuu  ccaaa  aguuuucaguUU U
 |||| ||||| |||  |||||  ||||||||||||  
 aacu uuguC AGA  GGUUU  UCAAAAGUCAAA A
a    u     C   AU     GU            A 

Annotation confidence Low

Genome context

Chr2: 35135995-35136067 [+]

Mature lja-miR11159-5p

• Accession: MIMAT0054719
• Description: Lotus japonicus lja-miR11159-5p mature miRNA
• Sequence: 32 - UUUUAAAAACUGAAAACU - 49
• Evidence: experimental ; unknown

Mature lja-miR11159-3p

• Accession: MIMAT0043956
• Description: Lotus japonicus lja-miR11159-3p mature miRNA
• Sequence: 40 - ACUGAAAACUUGUUUGGUAAGACC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256