Stem-loop lja-MIR11160

Accession

MI0035936

Description

Lotus japonicus lja-MIR11160 precursor miRNA

Sequence

uuaugagaAGACUGAUUUGAUAGGAGAACUCCucaagugaggagguuuuaugaaaauuagucugaaguga
((((....((((((((((.....((((.((((((....)))))).))))....))))))))))...))))

Structure

    gaga          GAUAG    A      a 
uuau    AGACUGAUUU     GAGA CUCCuc a
||||    ||||||||||     |||| ||||||  
agug    ucugauuaaa     uuuu gaggag g
    -aag          -agua    g      u 

Annotation confidence Not enough data

Genome context

Chr3: 24346197-24346266 [+]

Mature lja-miR11160-5p

• Accession: MIMAT0043958
• Description: Lotus japonicus lja-miR11160-5p mature miRNA
• Sequence: 9 - AGACUGAUUUGAUAGGAGAACUCC - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256