Stem-loop lja-MIR11161

Accession

MI0035937

Description

Lotus japonicus lja-MIR11161 precursor miRNA

Sequence

ggaaaaccaaggugaAGCCAAAACCAUCGUGGACAGAGGcaacuucccuuaacuuuugcgacuuccacuaugguuuuggccuuaucgugguuuucc
(((((((((.(((((.(((((((((((.(((((.((..((((.............))))..))))))).))))))))))).))))).)))))))))

Structure

         a     A           C     C  AG    cuucc 
ggaaaacca gguga GCCAAAACCAU GUGGA AG  Gcaa     c
||||||||| ||||| ||||||||||| ||||| ||  ||||     u
ccuuuuggu cuauu cgguuuuggua caccu uc  cguu     u
         g     c           u     -  ag    uucaa 

Annotation confidence Not enough data

Genome context

Chr4: 38419732-38419827 [+]

Mature lja-miR11161-5p

• Accession: MIMAT0043959
• Description: Lotus japonicus lja-miR11161-5p mature miRNA
• Sequence: 16 - AGCCAAAACCAUCGUGGACAGAGG - 39
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256