Stem-loop lja-MIR11163

Accession

MI0035939

Description

Lotus japonicus lja-MIR11163 precursor miRNA

Sequence

519 reads, 61.0 reads per million, 8 experiments

gaccguggcaauaaggucucuauugccacgguuaagcgcguAGCCGUGGCCAUAUGUGUACCCUAuugccacgguuaaguauguaaccguggccauauguggauucuauugccacgguuacACUUGAUGACCUGUGGCAAUAGGCuaaccaauugacacgguucaaccuugaaccguggcaauagagcaauugccacgcuc
((.(((((((((...(.(((((((((((((((((((.(...(((((((..((..((.((..((((((((((((((((....((((((((((((.(((.(......)))).)))))))))))).....))))).)))))))))))...))))..)).)))))))...))))).)))))))))))))))).))))))))).))

Structure

  c         aag u               -    c cgu       GC  UA  U  -AC           -     -agua            c   u ug 
ga cguggcaau   g cucuauugccacggu uaag g   AGCCGUG  CA  UG GU   CCUAuugccac gguua     uguaaccguggc aua g  g
|| |||||||||   | ||||||||||||||| |||| |   |||||||  ||  || ||   ||||||||||| |||||     |||||||||||| ||| |   
cu gcaccguua   c gagauaacggugcca guuc c   uuggcac  gu  ac ca   GGAUAACGGUG CCAGU     Acauuggcaccg uau c  a
  c         --a -               a    - aac       -a  ua  -  auC           U     AGUUC            u   - uu 

Annotation confidence Low

Genome context

Chr1: 46765309-46765509 [+]

Mature lja-miR11163-5p

• Accession: MIMAT0043961
• Description: Lotus japonicus lja-miR11163-5p mature miRNA
• Sequence: 42 - AGCCGUGGCCAUAUGUGUACCCUA - 65
• Evidence: experimental ; Illumina [1]

Mature lja-miR11163-3p

• Accession: MIMAT0054721
• Description: Lotus japonicus lja-miR11163-3p mature miRNA
• Sequence: 122 - ACUUGAUGACCUGUGGCAAUAGGC - 145
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256