Stem-loop lja-MIR11145d

Accession

MI0035940

Description

Lotus japonicus lja-MIR11145d precursor miRNA

Sequence

839 reads, 131.0 reads per million, 9 experiments

gucucucacuugucacgauuuuacacuuuuggucccucuaggaaaaaaauagcaaaAUUAGUCCCUCACAUUUACACACUuuuaccguuuuaguccaaauagggaucauuuucgcaaacaaauaagcaauguggaggaccaaaagugcuaauuuuuuuauuggggaccaaaagugcAAAAUCGUGAUAAGUGAGGGAu
((((((((((((((((((((((.((((((((((((((....(((((((.(((((......((((.(((((((.............((.....((((......))))......)).............))))))).))))......))))).)))))))...)))))))))))))).))))))))))))))))))))))

Structure

                      a              cuag       a     aaAUUA    C       UACACACUuuuac  -uuuua    aa 
gucucucacuugucacgauuuu cacuuuuggucccu    gaaaaaa uagca      GUCC UCACAUU             cg      gucc  a
|||||||||||||||||||||| ||||||||||||||    ||||||| |||||      |||| |||||||             ||      ||||   
uAGGGAGUGAAUAGUGCUAAAA gugaaaaccagggg    uuuuuuu aucgu      cagg gguguaa             gc      uagg  u
                      c              -uua       a     gaaaac    a       cgaauaaacaaac  uuuuac    ga 

Annotation confidence Not enough data

Genome context

Chr0: 7498759-7498956 [+]

Mature lja-miR11145d-5p

• Accession: MIMAT0054722
• Description: Lotus japonicus lja-miR11145d-5p mature miRNA
• Sequence: 57 - AUUAGUCCCUCACAUUUACACACU - 80
• Evidence: experimental ; unknown

Mature lja-miR11145d-3p

• Accession: MIMAT0043962
• Description: Lotus japonicus lja-miR11145d-3p mature miRNA
• Sequence: 177 - AAAAUCGUGAUAAGUGAGGGA - 197
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256