Stem-loop lja-MIR11164

Accession

MI0035943

Description

Lotus japonicus lja-MIR11164 precursor miRNA

Sequence

338 reads, 56.0 reads per million, 8 experiments

ggauuuucaaaagugcAUGUUUGGAGACUCAUUUGAAAACaaaagugaagcaaaaaucaugguguacagaagcaacuuucauuagcauuugcuuauguccaucaUGAUUUUGACUUCGCCGUAAUUUUucgaaugaguuucuuaacauauaauagcuagggagaucu
((((((((...(((..(((((.(((((((((((((((((.....((((((..((((((((((((.(((.((((((((......))...)))))).))).))))))))))))..))))))......))))))))))))))))).)))))......)))..))))))))

Structure

        aaa   ----gc     U                 -Caaaa      ca            u   g      ---  uu 
ggauuuuc   agu      AUGUU GGAGACUCAUUUGAAAA      gugaag  aaaaucauggug aca aagcaa   cu  c
||||||||   |||      ||||| |||||||||||||||||      ||||||  |||||||||||| ||| ||||||   ||   
ucuagagg   ucg      uacaa ucuuugaguaagcuUUU      CGCUUC  UUUUAGUacuac ugu uucguu   ga  a
        -ga   auaaua     u                 UAAUGC      AG            c   a      uac  uu 

Annotation confidence Not enough data

Genome context

Chr1: 16584007-16584173 [-]

Mature lja-miR11164-5p

• Accession: MIMAT0043965
• Description: Lotus japonicus lja-miR11164-5p mature miRNA
• Sequence: 17 - AUGUUUGGAGACUCAUUUGAAAAC - 40
• Evidence: experimental ; Illumina [1]

Mature lja-miR11164-3p

• Accession: MIMAT0054723
• Description: Lotus japonicus lja-miR11164-3p mature miRNA
• Sequence: 105 - UGAUUUUGACUUCGCCGUAAUUUU - 128
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256