Stem-loop lja-MIR11108w

Accession

MI0035944

Description

Lotus japonicus lja-MIR11108w precursor miRNA

Sequence

247 reads, 32.0 reads per million, 7 experiments

uuuuaguuauaauguuuuuuaUUAAGUGAGGUUGUCUGAAUGACccuagauaaaguuugguuaaacaacucugauuuuaaguagaccaauaauauuuaagauaaacgauaaaauauaaaaaaauuaucucacuuauuuuaaauaucauugguuaagcuagaacauauguaauuuaaccuaaauuuuaucgUCAUUUAGAUAACUCUUUaauaaguuuuuaauuauuuuaaaa
.(((((..(((((....(((((((((.(((.(((((((((((((....(((((((((((((((((..((..((.(((((..(.(((((((.(((((((((((((..(((((............)))))....))))))))))))).))))))).)..)))))))...))..))))))).)))))))))))))))))))))))))))))))))))......))))).))))).

Structure

u     uu     --guuu         U   G             ccua          -       ca  -uc  a     ag a       a             --ac     aauau 
 uuuag  auaau      uuuaUUAAG GAG UUGUCUGAAUGAC    gauaaaguuu gguuaaa  ac   ug uuuua  u gaccaau auauuuaagauaa    gauaa     a
 |||||  |||||      ||||||||| ||| |||||||||||||    |||||||||| |||||||  ||   || |||||  | ||||||| |||||||||||||    |||||      
 aaauu  uauua      gaauaaUUU CUC AAUAGAUUUACUg    cuauuuuaaa ccaauuu  ug   ac aagau  a uugguua uauaaauuuuauu    cuauu     a
a     -u     auuuuu         -   -             ----          u       aa  uau  -     cg a       c             cacu     aaaaa 

Annotation confidence Not enough data

Genome context

Chr2: 37228585-37228816 [-]

Mature lja-miR11108w-5p

• Accession: MIMAT0043966
• Description: Lotus japonicus lja-miR11108w-5p mature miRNA
• Sequence: 22 - UUAAGUGAGGUUGUCUGAAUGAC - 44
• Evidence: experimental ; Illumina [1]

Mature lja-miR11108w-3p

• Accession: MIMAT0054724
• Description: Lotus japonicus lja-miR11108w-3p mature miRNA
• Sequence: 191 - UCAUUUAGAUAACUCUUU - 208
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256