Stem-loop lja-MIR166

Accession

MI0035945

Description

Lotus japonicus lja-MIR166 precursor miRNA

Literature search

2 open access papers mention lja-MIR166
(4 sentences)

Sequence

4015644 reads, 267912.0 reads per million, 9 experiments

guugaggGGAAUGCUGUCUGGUUCGAGAucauucuuaugaagcaaagaaaaccgaggaaaggaaugauuUCGGACCAGGCUUCAUUCCCCccagc
((((.((((((((..(((((((((((((((((((((.......................)))))))))))))))))))))..)))))))).))))

Structure

    a        CU                     augaagcaaa 
guug ggGGAAUG  GUCUGGUUCGAGAucauucuu          g
|||| ||||||||  |||||||||||||||||||||          a
cgac CCCCUUAC  CGGACCAGGCUuuaguaagga          a
    c        UU                     aaggagccaa 

Annotation confidence High

Genome context

Chr1: 992525-992619 [-]

Mature lja-miR166-5p

• Accession: MIMAT0054725
• Description: Lotus japonicus lja-miR166-5p mature miRNA
• Sequence: 8 - GGAAUGCUGUCUGGUUCGAGA - 28
• Evidence: experimental ; unknown

Mature lja-miR166-3p

• Accession: MIMAT0043967
• Description: Lotus japonicus lja-miR166-3p mature miRNA
• Sequence: 70 - UCGGACCAGGCUUCAUUCCCC - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256