Stem-loop lja-MIR11165

Accession

MI0035946

Description

Lotus japonicus lja-MIR11165 precursor miRNA

Sequence

aauuacacucaacugccuugagguuuccuuauauaacacuaaauuuuaaauuucaucaaauauuacacuucacucaauuuuccucaaguagauaauaauuuuuuuaacaauauucucuaacaaaaagugggguagaguguaguauuuaaguaaauuuggaguuuaguguCAUAAAAGGAAACCUCAAUGUAGCugaguguaauu
(((((((((((.((((.(((((((((((((.(((.((((((((((((((((((..(.(((((((((((((.((((.(((((.......((((.((((.............)))).))))....))))).)))).))))))))))))).)..)))))))))))))))))).))).))))))))))))).)))).)))))))))))

Structure

           a    c             a   a                  ca c             c    a     ccucaag    u    auuuu 
aauuacacuca cugc uugagguuuccuu uau acacuaaauuuuaaauuu  u aaauauuacacuu acuc auuuu       uaga aaua     u
||||||||||| |||| ||||||||||||| ||| ||||||||||||||||||  | ||||||||||||| |||| |||||       |||| ||||     u
uuaaugugagu GAUG AACUCCAAAGGAA AUA ugugauuugagguuuaaa  a uuuaugaugugag uggg ugaaa       aucu uuau     u
           C    U             A   C                  ug a             a    g     ---aaca    c    aacaa 

Annotation confidence Not enough data

Genome context

Chr4: 37324725-37324928 [-]

Mature lja-miR11165-3p

• Accession: MIMAT0043968
• Description: Lotus japonicus lja-miR11165-3p mature miRNA
• Sequence: 170 - CAUAAAAGGAAACCUCAAUGUAGC - 193
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256