Stem-loop lja-MIR11166

Accession

MI0035947

Description

Lotus japonicus lja-MIR11166 precursor miRNA

Sequence

360 reads, 29.0 reads per million, 8 experiments

agauccaUUGUUACGGUCCUCUUUGCUaucuguauaauggcaaauauaguagcugugguuugagaaaguaggccagaaggccgaauaacucgccUUGUGAACUAUUUGAUCAUUguauggauaguagaggggcucccgaguccagugguaucu
((((((((((...(((.((((((((((((((((((((((((((..(((((.((...(((..(((......((((....))))......))))))..))..)))))))).)))))))))))))))))))))))...)))....)))))).))))

Structure

    -      -UUA   --U                       -   au     -a  ugu   uu   aaagua    a 
agau ccaUUG    CGG   CCUCUUUGCUaucuguauaaugg caa  auagu  gc   ggu  gag      ggcc g
|||| ||||||    |||   ||||||||||||||||||||||| |||  |||||  ||   |||  |||      ||||  
ucua ggugac    gcc   ggggagaugauagguaugUUACU GUU  UAUCA  UG   ccg  cuc      ccgg a
    u      cuga   cuc                       A   --     AG  -UU   --   aauaag    a 

Annotation confidence Not enough data

Genome context

Chr2: 22051964-22052116 [+]

Mature lja-miR11166-5p

• Accession: MIMAT0054726
• Description: Lotus japonicus lja-miR11166-5p mature miRNA
• Sequence: 8 - UUGUUACGGUCCUCUUUGCU - 27
• Evidence: experimental ; unknown

Mature lja-miR11166-3p

• Accession: MIMAT0043969
• Description: Lotus japonicus lja-miR11166-3p mature miRNA
• Sequence: 95 - UUGUGAACUAUUUGAUCAUU - 114
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256