Stem-loop lja-MIR11135d

Accession

MI0035948

Description

Lotus japonicus lja-MIR11135d precursor miRNA

Sequence

810 reads, 96.0 reads per million, 9 experiments

ugauaguauaagcuuaaaCAAUACAUUAUAGACUUAUcaauuguuuggugcuaaCAUUGUAUUGUAUAAGCUUAUacauca
((((.(((((((((((.((((((((...(((...((((((....)))))))))....)))))))).)))))))))))))))

Structure

    a           a        -UUA   ACU      u 
ugau guauaagcuua aCAAUACA    UAG   UAUcaa u
|||| ||||||||||| ||||||||    |||   ||||||  
acua caUAUUCGAAU UGUUAUGU    auc   gugguu g
    -           A        UACa   ---      u 

Annotation confidence Low

Genome context

Chr0: 11597599-11597679 [+]

Mature lja-miR11135d-5p

• Accession: MIMAT0054727
• Description: Lotus japonicus lja-miR11135d-5p mature miRNA
• Sequence: 19 - CAAUACAUUAUAGACUUAU - 37
• Evidence: experimental ; unknown

Mature lja-miR11135d-3p

• Accession: MIMAT0043970
• Description: Lotus japonicus lja-miR11135d-3p mature miRNA
• Sequence: 55 - CAUUGUAUUGUAUAAGCUUAU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256