Stem-loop lja-MIR11167

Accession

MI0035949

Description

Lotus japonicus lja-MIR11167 precursor miRNA

Sequence

aagagauaaauauGAAAAUGGUCUCUAAACUAUGAGCgaaaauugguuuugguccccgccggcguaacuucuggaaauauucccuccagugcggugaaccaccgugccugagauuugguccggccauuuccggcacggugguucgcuucacaggaggaacuauuuucggaaguuacgcaggcgagggaccaaaaccagcuuucgcucauaguucaggaaccauuaucauauuuaucccuu
(((.(((((((((((.((((((.(((.((((((((((((((.((((((((((((((((((.((((((((((((((((((...(((((.(((.((((((((((((((((.((((..((((...)))))))).)))))))))))))))).))).)))))...)))))))))))))))))).)))).)))))))))))))).)))))))))))))).))).)))))).))))))))))).)))

Structure

   a           A      C   A              a              -    g                  uuc     a   c                u    uu    c 
aag gauaaauauGA AAUGGU UCU AACUAUGAGCgaaa uugguuuugguccc cgcc gcguaacuucuggaaaua   ccucc gug ggugaaccaccgugcc gaga  uggu  
||| ||||||||||| |||||| ||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||   ||||| ||| |||||||||||||||| ||||  |||| c
uuc cuauuuauacu uuacca gga uugauacucgcuuu gaccaaaaccaggg gcgg cgcauugaaggcuuuuau   ggagg cac ucgcuugguggcacgg cuuu  accg  
   c           a      a   c              c              a    a                  caa     a   u                c    --    g 

Annotation confidence Not enough data

Genome context

Chr2: 12541485-12541724 [+]

Mature lja-miR11167-5p

• Accession: MIMAT0043971
• Description: Lotus japonicus lja-miR11167-5p mature miRNA
• Sequence: 14 - GAAAAUGGUCUCUAAACUAUGAGC - 37
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256