Stem-loop lja-MIR11167

Accession

MI0035949

Description

Lotus japonicus lja-MIR11167 precursor miRNA

Sequence

286 reads, 46.0 reads per million, 9 experiments

aagagauaaauaugaaaauggucucuaaacuaugagcgaaaauugguUUUGGUCCCCGCCGGCGUAACuucuggaaauauucccuccagugcggugaaccaccgugccugagauuugguccggccauuuccggcacggugguucgcuucacaggaggaacuauuuucggaaguuacgcaggcgagggaccaaaaccagcUUUCGCUCAUAGUUCAGGAACCAUuaucauauuuaucccuu
(((.(((((((((((.((((((.(((.((((((((((((((.((((((((((((((((((.((((((((((((((((((...(((((.(((.((((((((((((((((.((((..((((...)))))))).)))))))))))))))).))).)))))...)))))))))))))))))).)))).)))))))))))))).)))))))))))))).))).)))))).))))))))))).)))

Structure

   a           a      c   a              a              -    G                  uuc     a   c                u    uu    c 
aag gauaaauauga aauggu ucu aacuaugagcgaaa uugguUUUGGUCCC CGCC GCGUAACuucuggaaaua   ccucc gug ggugaaccaccgugcc gaga  uggu  
||| ||||||||||| |||||| ||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||   ||||| ||| |||||||||||||||| ||||  |||| c
uuc cuauuuauacu uUACCA GGA UUGAUACUCGCUUU gaccaaaaccaggg gcgg cgcauugaaggcuuuuau   ggagg cac ucgcuugguggcacgg cuuu  accg  
   c           a      A   C              c              a    a                  caa     a   u                c    --    g 

Annotation confidence Low

Genome context

Chr2: 12541485-12541724 [+]

Mature lja-miR11167-5p

• Accession: MIMAT0043971
• Description: Lotus japonicus lja-miR11167-5p mature miRNA
• Sequence: 48 - UUUGGUCCCCGCCGGCGUAAC - 68
• Evidence: experimental ; Illumina [1]

Mature lja-miR11167-3p

• Accession: MIMAT0054728
• Description: Lotus japonicus lja-miR11167-3p mature miRNA
• Sequence: 200 - UUUCGCUCAUAGUUCAGGAACCAU - 223
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256