Stem-loop lja-MIR11168

Accession

MI0035950

Description

Lotus japonicus lja-MIR11168 precursor miRNA

Sequence

1981 reads, 186.0 reads per million, 9 experiments

uguugccacgauccaaggAGGAACCGUGGCAAUAGAUGACCUcuauugccacgggccagggaggaaccguggcaauagauGGCCUCUAUUGCCACGGUCcagguaggaaccguggcaaua
((((((((((.(((.....(((.(((((((((((((.(.(((((((((((((((.((.....))..))))))))))))).))).)))))))))))))))).....)))..))))))))))

Structure

          -a   aaggA   A             U A  -             -g  a 
uguugccacg  ucc     GGA CCGUGGCAAUAGA G CC Ucuauugccacgg  cc g
||||||||||  |||     ||| ||||||||||||| | || |||||||||||||  || g
auaacggugc  agg     cCU GGCACCGUUAUCU C GG agauaacggugcc  gg g
          ca   augga   -             C -  u             aa  a 

Annotation confidence Low

Genome context

Chr0: 4976259-4976378 [+]

Mature lja-miR11168-5p

• Accession: MIMAT0043972
• Description: Lotus japonicus lja-miR11168-5p mature miRNA
• Sequence: 19 - AGGAACCGUGGCAAUAGAUGACCU - 42
• Evidence: experimental ; Illumina [1]

Mature lja-miR11168-3p

• Accession: MIMAT0054729
• Description: Lotus japonicus lja-miR11168-3p mature miRNA
• Sequence: 81 - GGCCUCUAUUGCCACGGUC - 99
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256