Stem-loop lja-MIR1120

Accession

MI0035951

Description

Lotus japonicus lja-MIR1120 precursor miRNA

Sequence

496 reads, 51.0 reads per million, 8 experiments

acgguuaccugaaugauuuacacuacuucaUCCGUCCCCUAUUAUAAGacccuuuauugucagacaguaaugaguCUUAUAAUAAGGGACGGAGGGAguauuauuuuuaacaccgu
(((((.....((((((.......((((((.((((((((.(((((((((((.(.(((((((...))))))).).))))))))))).)))))))).)))))))))))).....)))))

Structure

     uaccu      uuuacac      a        C           c u       c 
acggu     gaauga       uacuuc UCCGUCCC UAUUAUAAGac c uuauugu  
|||||     ||||||       |||||| |||||||| ||||||||||| | ||||||| a
ugcca     uuuauu       augAGG AGGCAGGG AUAAUAUUCug g aaugaca  
     caauu      -------      G        A           a u       g 

Annotation confidence Low

Genome context

Chr3: 8550890-8551005 [-]

Mature lja-miR1120-5p

• Accession: MIMAT0054730
• Description: Lotus japonicus lja-miR1120-5p mature miRNA
• Sequence: 31 - UCCGUCCCCUAUUAUAAG - 48
• Evidence: experimental ; unknown

Mature lja-miR1120-3p

• Accession: MIMAT0043973
• Description: Lotus japonicus lja-miR1120-3p mature miRNA
• Sequence: 76 - CUUAUAAUAAGGGACGGAGGGA - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256