Stem-loop lja-MIR11169

Accession

MI0035952

Description

Lotus japonicus lja-MIR11169 precursor miRNA

Sequence

807 reads, 84.0 reads per million, 9 experiments

cauacuuaaccaugaagUUCUUAUGAGUUGGGCUCCugaaaagaaguugcaacuuguuuucgagagccCAACUCAUAAGAACUCCAUGauuaagugug
(((((((((.((((.((((((((((((((((((((.((((((.((((....)))).)))))).)))))))))))))))))))).)))).)))))))))

Structure

         c    a                    C      g    u 
cauacuuaa caug agUUCUUAUGAGUUGGGCUC ugaaaa aagu g
||||||||| |||| |||||||||||||||||||| |||||| ||||  
gugugaauu GUAC UCAAGAAUACUCAACccgag gcuuuu uuca c
         a    C                    a      g    a 

Annotation confidence Low

Genome context

Chr4: 23285605-23285702 [+]

Mature lja-miR11169-5p

• Accession: MIMAT0043974
• Description: Lotus japonicus lja-miR11169-5p mature miRNA
• Sequence: 18 - UUCUUAUGAGUUGGGCUCC - 36
• Evidence: experimental ; Illumina [1]

Mature lja-miR11169-3p

• Accession: MIMAT0054731
• Description: Lotus japonicus lja-miR11169-3p mature miRNA
• Sequence: 69 - CAACUCAUAAGAACUCCAUG - 88
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256