Stem-loop lja-MIR11170

Accession

MI0035953

Description

Lotus japonicus lja-MIR11170 precursor miRNA

Sequence

uuuucgcuccuaauuacuuuaauaccauucacaccuaguuucacuuaucuuacuuaccauacaaauuguauucaaauuugauuuuuaauaaaauuuguauggugaguuggauuagcaaaauuaaauguGAUGAUAUUAGAGUGAUUCGGAGUgagaa
.(((((((((.(((((((((((((.(((.((((..((((((..((.((((.((((((((((((((((.((((.(((......))).)))).)))))))))))))))).)))).))..))))))..))))))).))))))))))))).))))))))).

Structure

u         u             c   u    cc      ca  u    u                g    c   uu 
 uuucgcucc aauuacuuuaaua cau caca  uaguuu  cu aucu acuuaccauacaaauu uauu aaa  u
 ||||||||| ||||||||||||| ||| ||||  ||||||  || |||| |||||||||||||||| |||| |||   
 agagUGAGG UUAGUGAGAUUAU GUA Gugu  auuaaa  ga uagg ugagugguauguuuaa auaa uuu  g
a         C             A   -    aa      ac  u    u                a    u   ua 

Annotation confidence Not enough data

Genome context

Chr4: 22944142-22944298 [-]

Mature lja-miR11170-3p

• Accession: MIMAT0043975
• Description: Lotus japonicus lja-miR11170-3p mature miRNA
• Sequence: 129 - GAUGAUAUUAGAGUGAUUCGGAGU - 152
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256