Stem-loop lja-MIR11108o

Accession

MI0035954

Description

Lotus japonicus lja-MIR11108o precursor miRNA

Sequence

8540 reads, 1141.0 reads per million, 9 experiments

uaaaguuugaguuaaauaacucacuauccAAUUACAUUGGAGAUAAAUgaauuggaauuuauauauuuuauuuauuaauuuuuuccaacucauuuaucuucaaugUGAUUGGAUGAUGAGUUAUUUAACccaaacuuua
(((((((((.(((((((((((((.((((((((((((((((((((((((((.((((((.........................)))))).)))))))))))))))))))))))))).))))))))))))).)))))))))

Structure

         a             c                          a      uuuauauauuu 
uaaaguuug guuaaauaacuca uauccAAUUACAUUGGAGAUAAAUga uuggaa           u
||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||           a
auuucaaac CAAUUUAUUGAGU GUAGGUUAGUguaacuucuauuuacu aaccuu           u
         c             A                          c      uuuuaauuauu 

Annotation confidence Low

Genome context

Chr2: 4325653-4325791 [+]

Mature lja-miR11108o-5p

• Accession: MIMAT0054732
• Description: Lotus japonicus lja-miR11108o-5p mature miRNA
• Sequence: 30 - AAUUACAUUGGAGAUAAAU - 48
• Evidence: experimental ; unknown

Mature lja-miR11108o-3p

• Accession: MIMAT0043976
• Description: Lotus japonicus lja-miR11108o-3p mature miRNA
• Sequence: 106 - UGAUUGGAUGAUGAGUUAUUUAAC - 129
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256