Stem-loop lja-MIR11108p

Accession

MI0035955

Description

Lotus japonicus lja-MIR11108p precursor miRNA

Sequence

8066 reads, 1195.0 reads per million, 9 experiments

guuaaauaacucaucauucaaucacauuugagauaagUGAGUUGGAAAUAAAUUAAUAAAUaaaauauagaaauuucaccucacuuauuuucaauaUGAUUGGAUGAUGAGUUAUUUAACcc
((((((((((((((((((((((((.(((.((((((((((((.(((((..........................))))).)))))))))))).))).))))))))))))))))))))))))..

Structure

--                        c   u            U     AUAAAUUAAUAA 
  guuaaauaacucaucauucaauca auu gagauaagUGAG UGGAA            A
  |||||||||||||||||||||||| ||| |||||||||||| |||||             
  CAAUUUAUUGAGUAGUAGGUUAGU uaa uuuuauucacuc acuuu            U
cc                        a   c            c     aaagauauaaaa 

Annotation confidence Low

Genome context

Chr3: 47651549-47651670 [-]

Mature lja-miR11108p-5p

• Accession: MIMAT0043977
• Description: Lotus japonicus lja-miR11108p-5p mature miRNA
• Sequence: 38 - UGAGUUGGAAAUAAAUUAAUAAAU - 61
• Evidence: experimental ; Illumina [1]

Mature lja-miR11108p-3p

• Accession: MIMAT0043978
• Description: Lotus japonicus lja-miR11108p-3p mature miRNA
• Sequence: 97 - UGAUUGGAUGAUGAGUUAUUUAAC - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256