Stem-loop lja-MIR11171

Accession

MI0035957

Description

Lotus japonicus lja-MIR11171 precursor miRNA

Sequence

GCUUGACGAUCGGGCCUGGAGAGCcgacuccuccgggacucgaaaucaagcnn
((((((...((((((((((((((....)).))))))).)))))..))))))..

Structure

--      CGA     -       -  C 
  GCUUGA   UCGGG CCUGGAG AG c
  ||||||   ||||| ||||||| ||  
  cgaacu   agcuc gggccuc uc g
nn      -aa     a       c  a 

Annotation confidence Not enough data

Genome context

Unknown

Mature lja-miR11171-5p

• Accession: MIMAT0043980
• Description: Lotus japonicus lja-miR11171-5p mature miRNA
• Sequence: 1 - GCUUGACGAUCGGGCCUGGAGAGC - 24
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256