Stem-loop lja-MIR11078g

Accession

MI0035958

Description

Lotus japonicus lja-MIR11078g precursor miRNA

Sequence

acauugucaaccaaucaaauuucaauaaugcgucaugucaauuaauaaaauuaaauaaacgauagauauucucacaucuuUAAAAUCUGAUUGGCUGACGGUGU
(((((((((.(((((((.((((.((..(((.(..(((((.(((.................))).)))))...).)))..)).)))).))))))).)))))))))

Structure

         a       a    c  ua   c -uc     a   aauaaaa 
acauuguca ccaauca auuu aa  aug g   auguc auu       u
||||||||| ||||||| |||| ||  ||| |   ||||| |||       u
UGUGGCAGU GGUUAGU UAAA Uu  uac c   uauag uag       a
         C       C    A  uc   a ucu     a   caaauaa 

Annotation confidence Not enough data

Genome context

Chr3: 29973317-29973420 [-]

Mature lja-miR11078g-3p

• Accession: MIMAT0043981
• Description: Lotus japonicus lja-miR11078g-3p mature miRNA
• Sequence: 81 - UAAAAUCUGAUUGGCUGACGGUGU - 104
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256