Stem-loop lja-MIR11155c

Accession

MI0035960

Description

Lotus japonicus lja-MIR11155c precursor miRNA

Sequence

879 reads, 116.0 reads per million, 9 experiments

gaguuuguaagcgaguuugauuugagucccucugaCGAAAAAUGACGUUUAGUGacgguaaaaaaaccgccaacuaacgucauuuuucgucagaAGGACUAAAAUCAAACUCGggacaaauuu
((((((((...((((((((((((.(((((.(((((((((((((((((((.((((.((((......)))).).)))))))))))))))))))))).))))).))))))))))))..))))))))

Structure

        aag            g     c                   U   - a    aa 
gaguuugu   cgaguuugauuu agucc ucugaCGAAAAAUGACGUU AGU G cggu  a
||||||||   |||||||||||| ||||| ||||||||||||||||||| ||| | ||||   
uuuaaaca   GCUCAAACUAAA UCAGG agacugcuuuuuacugcaa uca c gcca  a
        -gg            A     A                   -   a c    aa 

Annotation confidence Low

Genome context

Chr1: 58396755-58396877 [+]

Mature lja-miR11155c-5p

• Accession: MIMAT0043983
• Description: Lotus japonicus lja-miR11155c-5p mature miRNA
• Sequence: 36 - CGAAAAAUGACGUUUAGUG - 54
• Evidence: experimental ; Illumina [1]

Mature lja-miR11155c-3p

• Accession: MIMAT0043984
• Description: Lotus japonicus lja-miR11155c-3p mature miRNA
• Sequence: 95 - AGGACUAAAAUCAAACUCG - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256