Stem-loop lja-MIR11175

Accession

MI0035963

Description

Lotus japonicus lja-MIR11175 precursor miRNA

Sequence

142 reads, 19.0 reads per million, 7 experiments

gaauuugaauuguucgaucaagaucgggcggcucaaauuuuaagcuuauauuuAUCGUCUGUUAUUGAUAAAAUAUGagucaauugaucuUUGAUUGAACGGUUUGAAUUC
(((((((((((((((((((((((((((..((((((...........(((.(((((((........))))))))))))))))..)))))).)))))))))))))))))))))

Structure

                     -      gc      aauuuuaagcu   a       UCU 
gaauuugaauuguucgaucaa gaucgg  ggcuca           uau uuuAUCG   G
||||||||||||||||||||| ||||||  ||||||           ||| |||||||    
CUUAAGUUUGGCAAGUUAGUU cuaguu  cugaGU           AUA AAAUAGU   U
                     u      aa      -----------   -       UAU 

Annotation confidence Not enough data

Genome context

Chr4: 40657280-40657390 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR11175

Mature lja-miR11175-5p

• Accession: MIMAT0043987
• Description: Lotus japonicus lja-miR11175-5p mature miRNA
• Sequence: 54 - AUCGUCUGUUAUUGAUAAAAUAUG - 77
• Evidence: experimental ; Illumina [1]

Mature lja-miR11175-3p

• Accession: MIMAT0054734
• Description: Lotus japonicus lja-miR11175-3p mature miRNA
• Sequence: 91 - UUGAUUGAACGGUUUGAAUUC - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256