miRBase entry: lja-MIR11175

Stem-loop lja-MIR11175

Accession

MI0035963

Description

Lotus japonicus lja-MIR11175 precursor miRNA

Sequence

gaauUUGAAUUGUUCGAUCAAGAUCGGGcggcucaaauuuuaagcuuauauuuaucgucuguuauugauaaaauaugagucaauugaucuuugauugaacgguuugaauuc
(((((((((((((((((((((((((((..((((((...........(((.(((((((........))))))))))))))))..)))))).)))))))))))))))))))))

Structure

                     -      Gc      aauuuuaagcu   a       ucu 
gaauUUGAAUUGUUCGAUCAA GAUCGG  ggcuca           uau uuuaucg   g
||||||||||||||||||||| ||||||  ||||||           ||| |||||||    
cuuaaguuuggcaaguuaguu cuaguu  cugagu           aua aaauagu   u
                     u      aa      -----------   -       uau

Annotation confidence Not enough data

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Genome context

Chr4: 40657280-40657390 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR11175

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature lja-miR11175-5p

Accession	MIMAT0043987
Description	Lotus japonicus lja-miR11175-5p mature miRNA
Sequence	5 - UUGAAUUGUUCGAUCAAGAUCGGG - 28
Evidence	experimental Illumina [1]

References

PubMed ID: 25967282
micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
"Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
"New Phytol (2015) 208:241-256