Stem-loop lja-MIR11178

Accession

MI0035966

Description

Lotus japonicus lja-MIR11178 precursor miRNA

Sequence

acguaguuguuggacaaagucuagucuuaauucuccuaaccaccaaauauauuacuuguucccaccaaacuuauaguaugauauauauuuuugccaaguauauuugguuuugccaaguauugccaaauauauaucauacuuuaaguuuggugggaacaagaaauauacUUGGUGGUUAGUAGAAUUAAGACUagacuuuuucaaacaacuacgu
(((((((((((.((.(((((((((((((((((((.(((((((((((.((((((.(((((((((((((((((((.((((((((((((((((..((.....(((((((((...))))))))).)).)))))))))))))))).))))))))))))))))))).)))))).))))))))))).))))))))))))))))))).)).)))))))))))

Structure

           g  c                   c           a      a                   u                uu  caagu         u 
acguaguuguu ga aaagucuagucuuaauucu cuaaccaccaa uauauu cuuguucccaccaaacuua aguaugauauauauuu  gc     auauuuggu  
||||||||||| || ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||  ||     ||||||||| u
ugcaucaacaa cu uuucagaUCAGAAUUAAGA GAUUGGUGGUU auauaa gaacaagggugguuugaau ucauacuauauauaaa  cg     uaugaaccg  
           a  u                   U           c      a                   u                -c  ----u         u 

Annotation confidence Not enough data

Genome context

Chr3: 23074137-23074350 [-]

Mature lja-miR11178-3p

• Accession: MIMAT0043990
• Description: Lotus japonicus lja-miR11178-3p mature miRNA
• Sequence: 169 - UUGGUGGUUAGUAGAAUUAAGACU - 192
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256