Stem-loop lja-MIR11179

Accession

MI0035967

Description

Lotus japonicus lja-MIR11179 precursor miRNA

Sequence

2570 reads, 238.0 reads per million, 9 experiments

ucucaagugugcacacguggucucuaaacuuuaaaaauagcauuucgcuaccccgacguuaagcUCCGUCAACACUUUUGGUCCCcagacagaugcuauuuuuAAUGUCGGGGUAGCGAAAUGCUAUuuuuaaaguuuaggaccacguuugcacacucgaga
((((.((((((((.((((((((.(((((((((((((((((((((((((((((((((((((((((((.(((........(((...)))))).)).))).....)))))))))))))))))))))))))))))))))))))))))))))).)))))))).))))

Structure

    a        c        u                                      -----   -  C   AACACUUU   U 
ucuc agugugca acgugguc cuaaacuuuaaaaauagcauuucgcuaccccgacguua     agc UC GUC        UGG  
|||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||     ||| || |||        ||| C
agag ucacacgu ugcaccag gauuugaaauuuuUAUCGUAAAGCGAUGGGGCUGUAAu     ucg ag cag        acC  
    c        u        -                                      uuuua   u  a   --------   C 

Annotation confidence Low

Genome context

Chr3: 9250821-9250982 [-]

Mature lja-miR11179-5p

• Accession: MIMAT0054736
• Description: Lotus japonicus lja-miR11179-5p mature miRNA
• Sequence: 65 - UCCGUCAACACUUUUGGUCCC - 85
• Evidence: experimental ; unknown

Mature lja-miR11179-3p

• Accession: MIMAT0043991
• Description: Lotus japonicus lja-miR11179-3p mature miRNA
• Sequence: 104 - AAUGUCGGGGUAGCGAAAUGCUAU - 127
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256