Stem-loop lja-MIR11097f

Accession

MI0035968

Description

Lotus japonicus lja-MIR11097f precursor miRNA

Sequence

gcacugucaguauaaacauuuuUUUAUACAGACGUCCAAUGAUAGGuuguuaagucauaaaauaagcuuuuaauuuaauuaaaauaaaaaugaucauaaaugcauuugaauacgugacauuccguuauuggacgucuguguaaaaauguuuuacacugacaaugc
(((.(((((((..(((((((((..(((((((((((((((((((.((.(((((.((....((((..((.((((.....(((........))).....)))).))))))....)).))))).)).))))))))))))))))))))))))))))...))))))).)))

Structure

   c       -au         UU                   A  u     a  caua    aa  u    auuua   aaa 
gca ugucagu   aaacauuuu  UAUACAGACGUCCAAUGAU GG uguua gu    aaau  gc uuua     auu   a
||| |||||||   |||||||||  ||||||||||||||||||| || ||||| ||    ||||  || ||||     |||    
cgu acaguca   uuuguaaaa  augugucugcagguuauug cu acagu ca    uuua  cg aaau     uaa   u
   a       cau         --                   c  u     g  uaag    --  u    acuag   aaa 

Annotation confidence Not enough data

Genome context

Chr2: 18775562-18775726 [+]

Mature lja-miR11097f-5p

• Accession: MIMAT0043992
• Description: Lotus japonicus lja-miR11097f-5p mature miRNA
• Sequence: 23 - UUUAUACAGACGUCCAAUGAUAGG - 46
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256