Stem-loop lja-MIR5287d

Accession

MI0035969

Description

Lotus japonicus lja-MIR5287d precursor miRNA

Sequence

1807 reads, 188.0 reads per million, 9 experiments

ccuccgauuacuauuaucauaaaaagaaacaaguuuuuaaauucguUCAAUAAAUGAUGUAUCUAGucuauaauaaugacuagauacauuauuuauucaauuaauuuaaaauguuauuuuuuugcUUAUAAUAGUGACCGGAGG
((((((.((((((((((..((((((((((((...(((((((((.(((.((((((((((((((((((((.........)))))))))))))))))))).))).))))))))))))).))))))))...)))))))))).))))))

Structure

      a          -ca        -    agu         c   C                    uau 
ccuccg uuacuauuau   uaaaaaga aaca   uuuuaaauu guU AAUAAAUGAUGUAUCUAGuc   a
|||||| ||||||||||   |||||||| ||||   ||||||||| ||| ||||||||||||||||||||   a
GGAGGC AGUGAUAAUA   guuuuuuu uugu   aaaauuuaa uaa uuauuuauuacauagaucag   u
      C          UUc        a    ---         u   c                    uaa 

Annotation confidence Low

Genome context

Chr3: 43633535-43633678 [+]

Mature lja-miR5287d-5p

• Accession: MIMAT0054737
• Description: Lotus japonicus lja-miR5287d-5p mature miRNA
• Sequence: 47 - UCAAUAAAUGAUGUAUCUAG - 66
• Evidence: experimental ; unknown

Mature lja-miR5287d-3p

• Accession: MIMAT0043993
• Description: Lotus japonicus lja-miR5287d-3p mature miRNA
• Sequence: 126 - UUAUAAUAGUGACCGGAGG - 144
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256