Stem-loop lja-MIR11180

Accession

MI0035971

Description

Lotus japonicus lja-MIR11180 precursor miRNA

Sequence

uuugacggacacaaaauugaaaguuaaaaaacuauacacgauuguguaaauuugaaacagccacaaauuguguacgauacauaauuuucagcaguuucaaaugcuauagucgugguuuUUUUACUUUCGAUUUUGUAACGGCaaa
.(((.((...((((((((((((((.(((((((....((((((((((...(((((((((.((...((((((((((...))))))))))...)).)))))))))..))))))))))))))))).))))))))))))))..)).))).

Structure

u   a  gac              u       uaua          uaa         a  cac          c 
 uug cg   acaaaauugaaagu aaaaaac    cacgauugug   auuugaaac gc   aaauugugua  
 ||| ||   |||||||||||||| |||||||    ||||||||||   ||||||||| ||   |||||||||| g
 aaC GC   UGUUUUAGCUUUCA UUUuuug    gugcugauau   uaaacuuug cg   uuuaauacau  
a   G  -AA              U       ----          -cg         a  acu          a 

Annotation confidence Not enough data

Genome context

Chr3: 47718890-47719034 [+]

Mature lja-miR11180-3p

• Accession: MIMAT0043995
• Description: Lotus japonicus lja-miR11180-3p mature miRNA
• Sequence: 119 - UUUUACUUUCGAUUUUGUAACGGC - 142
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256