Stem-loop gmo-mir-301c

Accession

MI0035981

Description

Gadus morhua gmo-mir-301c precursor miRNA

Literature search

1 open access papers mention gmo-mir-301c
(2 sentences)

Sequence

1517 reads, 35.0 reads per million, 19 experiments

CCAUGAUGACGUUGCACUACUguuccaaacgcccaagCAGUGCAACAGUAUUGUCAUAG
..(((((.((((((((((.((..............)).)))))))).))...)))))..

Structure

CC     --G  -        A  guucca 
  AUGAU   AC GUUGCACU CU      a
  |||||   || |||||||| ||       
  UACUG   UG CAACGUGA ga      a
GA     UUA  A        C  acccgc 

Annotation confidence High

Genome context

CAEA01054130.1: 253-311 [-]

Mature gmo-miR-301c-5p

• Accession: MIMAT0060422
• Description: Gadus morhua gmo-miR-301c-5p mature miRNA
• Sequence: 1 - CCAUGAUGACGUUGCACUACU - 21
• Evidence: experimental ; SOLiD [1]

Mature gmo-miR-301c-3p

• Accession: MIMAT0044012
• Description: Gadus morhua gmo-miR-301c-3p mature miRNA
• Sequence: 38 - CAGUGCAACAGUAUUGUCAUAG - 59
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305