miRBase entry: gmo-mir-223b

Stem-loop gmo-mir-223b


Accession
MI0036012
Description
Gadus morhua gmo-mir-223b precursor miRNA


Sequence

43115 reads, 626.0 reads per million, 20 experiments
GGGGUAUUUGACAAACUGACAcucugucuuuuaguguccAGCUCAGCUUGUCAAAUACACUa
.(((((((((((((.(((((((.(((.....))).))...).)))).))))))))))).)).

Structure
G  -           A    - ---  u   u 
 GG GUAUUUGACAA CUGA C   Ac cug c
 || ||||||||||| |||| |   || ||| u
 UC CAUAAACUGUU GACU G   ug gau u
a  A           C    C Acc  u   u 


Annotation confidence Medium
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Genome context
CAEA01406001.1: 327-388 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gmo-mir-223b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gmo-miR-223b-5p

Accession MIMAT0060426
Description Gadus morhua gmo-miR-223b-5p mature miRNA
Sequence 1 - GGGGUAUUUGACAAACUGACA - 21
Evidence experimental
SOLiD [1]

Mature gmo-miR-223b-3p

Accession MIMAT0044065
Description Gadus morhua gmo-miR-223b-3p mature miRNA
Sequence 40 - AGCUCAGCUUGUCAAAUACACU - 61
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305