Stem-loop gmo-mir-181a-4

Accession

MI0036032

Description

Gadus morhua gmo-mir-181a-4 precursor miRNA

Literature search

1 open access papers mention gmo-mir-181a-4
(4 sentences)

Sequence

2488821 reads, 54501.0 reads per million, 20 experiments

AACAUUCAACGCUGUCGGUGAGUuugugacucagagaaACCAUCGGGCGGAGAGUGUAC
.((((((..((((..(((((.((((.(.......).)))))))))))))..))))))..

Structure

-A      AA    GU     A    g ga 
  ACAUUC  CGCU  CGGUG GUuu u  c
  ||||||  ||||  ||||| |||| |  u
  UGUGAG  GCGG  GCUAC CAaa a  c
CA      AG    --     -    g ga 

Annotation confidence High

Genome context

HE566271.1: 313143-313201 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-181a-4

Mature gmo-miR-181a-5p

• Accession: MIMAT0044090
• Description: Gadus morhua gmo-miR-181a-5p mature miRNA
• Sequence: 1 - AACAUUCAACGCUGUCGGUGAGU - 23
• Evidence: experimental ; SOLiD [1]

Mature gmo-miR-181a-4-3p

• Accession: MIMAT0060434
• Description: Gadus morhua gmo-miR-181a-4-3p mature miRNA
• Sequence: 39 - ACCAUCGGGCGGAGAGUGUAC - 59
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305