miRBase entry: gmo-mir-24a-1

Stem-loop gmo-mir-24a-1


Accession
MI0036041
Description
Gadus morhua gmo-mir-24a-1 precursor miRNA


Sequence

gugccuacugaacugguaucaguguuuuaucugaaacUGGCUCAGUUCAGCAGGAAC
...(((.(((((((((..(((((.((......)).))))).))))))))).)))...

Structure
gug   a         ua     g  uu 
   ccu cugaacugg  ucagu uu  a
   ||| |||||||||  ||||| ||   
   GGA GACUUGACU  GGUca ag  u
CAA   C         -C     a  uc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
HE567057.1: 680262-680318 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from gmo-mir-24a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gmo-miR-24a-3p

Accession MIMAT0044048
Description Gadus morhua gmo-miR-24a-3p mature miRNA
Sequence 38 - UGGCUCAGUUCAGCAGGAAC - 57
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305