miRBase entry: gmo-mir-727

Stem-loop gmo-mir-727

Accession

MI0036136

Description

Gadus morhua gmo-mir-727 precursor miRNA

Sequence

UCAGUCUUCAAUUCCUUCCAGcccgucgcuauggaaacugugaguugaggcgaauugaagacuaa
..((((((((((((((((.(((...((((..........))))))))))).))))))))))))..

Structure

UC            -    C   ccg    uaug 
  AGUCUUCAAUUC CUUC AGc   ucgc    g
  |||||||||||| |||| |||   ||||     
  ucagaaguuaag ggag uug   agug    a
aa            c    -   ---    ucaa

Annotation confidence Not enough data

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Genome context

HE571531.1: 323062-323126 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-727

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gmo-miR-727-5p

Accession	MIMAT0044220
Description	Gadus morhua gmo-miR-727-5p mature miRNA
Sequence	1 - UCAGUCUUCAAUUCCUUCCAG - 21
Evidence	experimental SOLiD [1]

References

PubMed ID: 25881242
Temperature during early development has long-term effects on microRNA expression in Atlantic cod
Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
BMC Genomics (2015) 16:305