Stem-loop gmo-mir-727

Accession

MI0036136

Description

Gadus morhua gmo-mir-727 precursor miRNA

Sequence

163 reads, 5.0 reads per million, 10 experiments

UCAGUCUUCAAUUCCUUCCAGCccgucgcuauggaaacugugAGUUGAGGCGAAUUGAAGACUaa
..((((((((((((((((.(((...((((..........))))))))))).))))))))))))..

Structure

UC            -    C   ccg    uaug 
  AGUCUUCAAUUC CUUC AGC   ucgc    g
  |||||||||||| |||| |||   ||||     
  UCAGAAGUUAAG GGAG UUG   Agug    a
aa            C    -   ---    ucaa 

Annotation confidence Medium

Genome context

HE571531.1: 323062-323126 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-727

Mature gmo-miR-727-5p

• Accession: MIMAT0044220
• Description: Gadus morhua gmo-miR-727-5p mature miRNA
• Sequence: 1 - UCAGUCUUCAAUUCCUUCCAGC - 22
• Evidence: experimental ; SOLiD [1]

Mature gmo-miR-727-3p

• Accession: MIMAT0060457
• Description: Gadus morhua gmo-miR-727-3p mature miRNA
• Sequence: 43 - AGUUGAGGCGAAUUGAAGACU - 63
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305