Stem-loop gmo-mir-181a-3

Accession

MI0036147

Description

Gadus morhua gmo-mir-181a-3 precursor miRNA

Literature search

1 open access papers mention gmo-mir-181a-3
(4 sentences)

Sequence

2497581 reads, 54546.0 reads per million, 20 experiments

AACAUUCAACGCUGUCGGUGAGUuuugguauggaucacauagaaACCAUCGACCGUUGACUGUGCCc
.(((.((((((..(((((((.(((((..((((.....)))))))))))))))))))))).)))....

Structure

---A   U      CU       A     gg    g 
    ACA UCAACG  GUCGGUG GUuuu  uaug a
    ||| ||||||  ||||||| |||||  |||| u
    UGU AGUUGC  CAGCUAC CAaag  auac c
cCCG   C      --       -     --    a 

Annotation confidence High

Genome context

HE568639.1: 560748-560814 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-181a-3

Mature gmo-miR-181a-5p

• Accession: MIMAT0044090
• Description: Gadus morhua gmo-miR-181a-5p mature miRNA
• Sequence: 1 - AACAUUCAACGCUGUCGGUGAGU - 23
• Evidence: experimental ; SOLiD [1]

Mature gmo-miR-181a-3-3p

• Accession: MIMAT0060436
• Description: Gadus morhua gmo-miR-181a-3-3p mature miRNA
• Sequence: 45 - ACCAUCGACCGUUGACUGUGCC - 66
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305