Stem-loop gmo-mir-7c

Accession

MI0036149

Description

Gadus morhua gmo-mir-7c precursor miRNA

Literature search

1 open access papers mention gmo-mir-7c
(1 sentences)

Sequence

12385 reads, 238.0 reads per million, 19 experiments

UGGAAGACUAGUGAUUUUGUUGUggcauugaugaaagaaCAACAAGUCCCAGUCUACCUCU
.((.(((((.(.(((((.(((((...............))))))))))).))))).))...

Structure

--U  A     A U     U     ggcauu 
   GG AGACU G GAUUU GUUGU      g
   || ||||| | ||||| |||||      a
   CC UCUGA C CUGAA CAACa      u
UCU  A     C -     -     agaaag 

Annotation confidence High

Genome context

HE568639.1: 1000606-1000666 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-7c

Mature gmo-miR-7c-5p

• Accession: MIMAT0044236
• Description: Gadus morhua gmo-miR-7c-5p mature miRNA
• Sequence: 1 - UGGAAGACUAGUGAUUUUGUUGU - 23
• Evidence: experimental ; SOLiD [1]

Mature gmo-miR-7c-3p

• Accession: MIMAT0060460
• Description: Gadus morhua gmo-miR-7c-3p mature miRNA
• Sequence: 40 - CAACAAGUCCCAGUCUACCUCU - 61
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305