Stem-loop gmo-mir-29c

Accession

MI0036161

Description

Gadus morhua gmo-mir-29c precursor miRNA

Literature search

1 open access papers mention gmo-mir-29c
(1 sentences)

Sequence

1881 reads, 50.0 reads per million, 20 experiments

CUGAUUUCCUCUGGUGGUUUAGGUGuugcuaauuacagucUAGCACCAUAUGAAAUCAGUgu
((((((((...(((((..((((((((........))).))))))))))...))))))))...

Structure

---        CUC     GU     -   ugc 
   CUGAUUUC   UGGUG  UUAGG UGu   u
   ||||||||   |||||  ||||| |||    
   GACUAAAG   ACCAC  GAUcu aca   a
ugU        UAU     --     g   uua 

Annotation confidence High

Genome context

HE571494.1: 615383-615444 [+]

Mature gmo-miR-29c-5p

• Accession: MIMAT0044257
• Description: Gadus morhua gmo-miR-29c-5p mature miRNA
• Sequence: 1 - CUGAUUUCCUCUGGUGGUUUAGGUG - 25
• Evidence: experimental ; Illumina [2]

Mature gmo-miR-29c-3p

• Accession: MIMAT0044258
• Description: Gadus morhua gmo-miR-29c-3p mature miRNA
• Sequence: 41 - UAGCACCAUAUGAAAUCAGU - 60
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324