Stem-loop gmo-mir-454

Accession

MI0036181

Description

Gadus morhua gmo-mir-454 precursor miRNA

Sequence

1580 reads, 38.0 reads per million, 20 experiments

ACCCUAUCAGUAUUGCCCCUGcuguccacugaguucagagUAGUGCAAUAUUGCUUAUAGGGU
((((((((((((((((..(((((.....(((....)))))))).)))))))))...)))))))

Structure

       ---         CC     gucca   a 
ACCCUAU   CAGUAUUGC  CUGcu     cug g
|||||||   |||||||||  |||||     |||  
UGGGAUA   GUUAUAACG  GAUga     gac u
       UUC         -U     -----   u 

Annotation confidence High

Genome context

HE568745.1: 78575-78637 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-454

Mature gmo-miR-454-5p

• Accession: MIMAT0060467
• Description: Gadus morhua gmo-miR-454-5p mature miRNA
• Sequence: 1 - ACCCUAUCAGUAUUGCCCCUG - 21
• Evidence: experimental ; SOLiD [1]

Mature gmo-miR-454-3p

• Accession: MIMAT0044282
• Description: Gadus morhua gmo-miR-454-3p mature miRNA
• Sequence: 41 - UAGUGCAAUAUUGCUUAUAGGGU - 63
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305