Stem-loop gmo-mir-138-1

Accession

MI0036201

Description

Gadus morhua gmo-mir-138-1 precursor miRNA

Sequence

30729 reads, 857.0 reads per million, 20 experiments

AGCUGGUGUUGUGAAUCAGGCCGacgaccgacacuuugauuaccggCUACUUCACAACACCAGGGU
..(((((((((((((...(((((..((.(((....))).))..)))))..)))))))))))))...

Structure

-AG             UCA     ac  c   c 
   CUGGUGUUGUGAA   GGCCG  ga cga a
   |||||||||||||   |||||  || |||  
   GACCACAACACUU   UCggc  uu guu c
UGG             -CA     ca  a   u 

Annotation confidence Not enough data

Genome context

HE571270.1: 52215-52280 [-]

Mature gmo-miR-138-5p

• Accession: MIMAT0044223
• Description: Gadus morhua gmo-miR-138-5p mature miRNA
• Sequence: 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-138-1-3p

• Accession: MIMAT0060458
• Description: Gadus morhua gmo-miR-138-1-3p mature miRNA
• Sequence: 47 - CUACUUCACAACACCAGGGU - 66
• Evidence: experimental ; SOLiD [1], Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305