Stem-loop gmo-mir-181a-2

Accession

MI0036210

Description

Gadus morhua gmo-mir-181a-2 precursor miRNA

Literature search

1 open access papers mention gmo-mir-181a-2
(4 sentences)

Sequence

2487278 reads, 54361.0 reads per million, 20 experiments

AACAUUCAACGCUGUCGGUGAGUuuaaacugaggaaaACCAUCGAUCGUUGACUGUAC
.(((.((((((..(((((((.((((..........))))))))))))))))).)))..

Structure

-A   U      CU       A    aaac 
  ACA UCAACG  GUCGGUG GUuu    u
  ||| ||||||  ||||||| ||||     
  UGU AGUUGC  UAGCUAC CAaa    g
CA   C      --       -    agga 

Annotation confidence High

Genome context

HE570074.1: 250660-250717 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-181a-2

Mature gmo-miR-181a-5p

• Accession: MIMAT0044090
• Description: Gadus morhua gmo-miR-181a-5p mature miRNA
• Sequence: 1 - AACAUUCAACGCUGUCGGUGAGU - 23
• Evidence: experimental ; SOLiD [1]

Mature gmo-miR-181a-2-3p

• Accession: MIMAT0060435
• Description: Gadus morhua gmo-miR-181a-2-3p mature miRNA
• Sequence: 38 - ACCAUCGAUCGUUGACUGUAC - 58
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305