Stem-loop gmo-mir-216a

Accession

MI0036224

Description

Gadus morhua gmo-mir-216a precursor miRNA

Sequence

805 reads, 16.0 reads per million, 20 experiments

AAAUCUCAGCUGGCAACUGUGagucuuucacuaucugcacUCACAAUGGCCGCUGGGAUUAUg
.(((((((((.(((...((((((((...........).)))))))...))))))))))))...

Structure

--A         U   AAC       - uuuc 
   AAUCUCAGC GGC   UGUGagu c    a
   ||||||||| |||   ||||||| |    c
   UUAGGGUCG CCG   ACACUca g    u
gUA         -   GUA       c ucua 

Annotation confidence Medium

Genome context

HE567337.1: 56-118 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-216a

Mature gmo-miR-216a-5p

• Accession: MIMAT0044329
• Description: Gadus morhua gmo-miR-216a-5p mature miRNA
• Sequence: 1 - AAAUCUCAGCUGGCAACUGUG - 21
• Evidence: experimental ; SOLiD [1]

Mature gmo-miR-216a-3p

• Accession: MIMAT0044330
• Description: Gadus morhua gmo-miR-216a-3p mature miRNA
• Sequence: 41 - UCACAAUGGCCGCUGGGAUUAU - 62
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305