miRBase entry: gmo-mir-145

Stem-loop gmo-mir-145

Accession

MI0036228

Description

Gadus morhua gmo-mir-145 precursor miRNA

Sequence

GUCCAGUUUUCCCAGGAAUCCCUuguugaacaugaaagcgGGAUUCCUGGAAAUACUGUUCU
...((((.((.(((((((((((..(((.........)))))))))))))).)).))))....

Structure

-GUC    U  C           Uu   gaa 
    CAGU UU CCAGGAAUCCC  guu   c
    |||| || |||||||||||  |||   a
    GUCA AA GGUCCUUAGGg  cga   u
UCUU    U  A           --   aag

Annotation confidence Not enough data

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Genome context

HE568986.1: 3160-3221 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-145

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gmo-miR-145-5p

Accession	MIMAT0044334
Description	Gadus morhua gmo-miR-145-5p mature miRNA
Sequence	1 - GUCCAGUUUUCCCAGGAAUCCCU - 23
Evidence	experimental SOLiD [1]

Mature gmo-miR-145-3p

Accession	MIMAT0044335
Description	Gadus morhua gmo-miR-145-3p mature miRNA
Sequence	41 - GGAUUCCUGGAAAUACUGUUCU - 62
Evidence	experimental SOLiD [1]

References

PubMed ID: 25881242
Temperature during early development has long-term effects on microRNA expression in Atlantic cod
Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
BMC Genomics (2015) 16:305