Stem-loop gmo-mir-145

Accession

MI0036228

Description

Gadus morhua gmo-mir-145 precursor miRNA

Literature search

1 open access papers mention gmo-mir-145
(1 sentences)

Sequence

69155 reads, 802.0 reads per million, 20 experiments

GUCCAGUUUUCCCAGGAAUCCCUUGuugaacaugaaagcgggAUUCCUGGAAAUACUGUUCU
...((((.((.(((((((((((..(((.........)))))))))))))).)).))))....

Structure

-GUC    U  C           UU   gaa 
    CAGU UU CCAGGAAUCCC  Guu   c
    |||| || |||||||||||  |||   a
    GUCA AA GGUCCUUAggg  cga   u
UCUU    U  A           --   aag 

Annotation confidence High

Genome context

HE568986.1: 3160-3221 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-145

Mature gmo-miR-145-5p

• Accession: MIMAT0044334
• Description: Gadus morhua gmo-miR-145-5p mature miRNA
• Sequence: 1 - GUCCAGUUUUCCCAGGAAUCCCUUG - 25
• Evidence: experimental ; SOLiD [1]

Mature gmo-miR-145-3p

• Accession: MIMAT0044335
• Description: Gadus morhua gmo-miR-145-3p mature miRNA
• Sequence: 43 - AUUCCUGGAAAUACUGUUCU - 62
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305