miRBase entry: gmo-mir-18b

Stem-loop gmo-mir-18b

Accession

MI0036233

Description

Gadus morhua gmo-mir-18b precursor miRNA

Sequence

UAAGGUGCAUCUAGUGUAGUUAgugaacuuuccaauuucuacugcccuaguugcuccuucu
.((((.(((.((((.(((((.((...............))))))).)))).))).))))..

Structure

-U    U   U    U     U  ugaacu 
  AAGG GCA CUAG GUAGU Ag      u
  |||| ||| |||| ||||| ||      u
  uucc cgu gauc cguca uc      c
uc    u   u    c     -  uuuaac

Annotation confidence Not enough data

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Genome context

HE570140.1: 72460-72520 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gmo-mir-18b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gmo-miR-18b-5p

Accession	MIMAT0044342
Description	Gadus morhua gmo-miR-18b-5p mature miRNA
Sequence	1 - UAAGGUGCAUCUAGUGUAGUUA - 22
Evidence	experimental SOLiD [1]

References

PubMed ID: 25881242
Temperature during early development has long-term effects on microRNA expression in Atlantic cod
Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
BMC Genomics (2015) 16:305