Stem-loop gmo-mir-11189

Accession

MI0036238

Description

Gadus morhua gmo-mir-11189 precursor miRNA

Sequence

UGCUAGGGUAAUAUCCAUCAGGUUGacugccgcgcuggaguccaccaaggcguugagggaggcaaugggaugguucuugccuacguga
.((..((((((...(((((..((((.((.(((((((((......))..)))))...)).)).))))..)))))...))))))..))..

Structure

-U  UA      UAU     AG    a  g  ---     --  ag 
  GC  GGGUAA   CCAUC  GUUG cu cc   gcgcu  gg  u
  ||  ||||||   |||||  |||| || ||   |||||  ||   
  ug  uccguu   gguag  uaac ga gg   ugcgg  cc  c
ag  ca      cuu     gg    g  g  agu     aa  ac 

Annotation confidence Not enough data

Genome context

CAEA01133925.1: 498-585 [+]

Mature gmo-miR-11189-5p

• Accession: MIMAT0044348
• Description: Gadus morhua gmo-miR-11189-5p mature miRNA
• Sequence: 1 - UGCUAGGGUAAUAUCCAUCAGGUUG - 25
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305